Statistics for Ecologists Using R and Excel

Author: Mark Gardener
Publisher: Pelagic Publishing Ltd
ISBN: 1784271411
Category : Science
Languages : en
Pages : 503

Book Description
This is a book about the scientific process and how you apply it to data in ecology. You will learn how to plan for data collection, how to assemble data, how to analyze data and finally how to present the results. The book uses Microsoft Excel and the powerful Open Source R program to carry out data handling as well as producing graphs. Statistical approaches covered include: data exploration; tests for difference – t-test and U-test; correlation – Spearman’s rank test and Pearson product-moment; association including Chi-squared tests and goodness of fit; multivariate testing using analysis of variance (ANOVA) and Kruskal–Wallis test; and multiple regression. Key skills taught in this book include: how to plan ecological projects; how to record and assemble your data; how to use R and Excel for data analysis and graphs; how to carry out a wide range of statistical analyses including analysis of variance and regression; how to create professional looking graphs; and how to present your results. New in this edition: a completely revised chapter on graphics including graph types and their uses, Excel Chart Tools, R graphics commands and producing different chart types in Excel and in R; an expanded range of support material online, including; example data, exercises and additional notes & explanations; a new chapter on basic community statistics, biodiversity and similarity; chapter summaries and end-of-chapter exercises. Praise for the first edition: This book is a superb way in for all those looking at how to design investigations and collect data to support their findings. – Sue Townsend, Biodiversity Learning Manager, Field Studies Council [M]akes it easy for the reader to synthesise R and Excel and there is extra help and sample data available on the free companion webpage if needed. I recommended this text to the university library as well as to colleagues at my student workshops on R. Although I initially bought this book when I wanted to discover R I actually also learned new techniques for data manipulation and management in Excel – Mark Edwards, EcoBlogging A must for anyone getting to grips with data analysis using R and excel. – Amazon 5-star review It has been very easy to follow and will be perfect for anyone. – Amazon 5-star review A solid introduction to working with Excel and R. The writing is clear and informative, the book provides plenty of examples and figures so that each string of code in R or step in Excel is understood by the reader. – Goodreads, 4-star review

Statistics for Ecologists Using R and Excel

Author: Mark Gardener
Publisher: Data in the Wild
ISBN: 9781784271404
Category : Ecology
Languages : en
Pages : 0

Book Description
This book is about the scientific process and how to apply it to data in ecology. Microsoft Excel and open source R programming are used to demonstrate data handling, analysis, and displaying graphs. The book is aimed at persons working in ecology and environmental science, but scientists working in other disciplines will find the text useful as the principles and data analysis are the same.

Community Ecology

Author: Mark Gardener
Publisher: Pelagic Publishing Ltd
ISBN: 1907807632
Category : Science
Languages : en
Pages : 553

Book Description
Interactions between species are of fundamental importance to all living systems and the framework we have for studying these interactions is community ecology. This is important to our understanding of the planets biological diversity and how species interactions relate to the functioning of ecosystems at all scales. Species do not live in isolation and the study of community ecology is of practical application in a wide range of conservation issues. The study of ecological community data involves many methods of analysis. In this book you will learn many of the mainstays of community analysis including: diversity, similarity and cluster analysis, ordination and multivariate analyses. This book is for undergraduate and postgraduate students and researchers seeking a step-by-step methodology for analysing plant and animal communities using R and Excel. Microsoft's Excel spreadsheet is virtually ubiquitous and familiar to most computer users. It is a robust program that makes an excellent storage and manipulation system for many kinds of data, including community data. The R program is a powerful and flexible analytical system able to conduct a huge variety of analytical methods, which means that the user only has to learn one program to address many research questions. Its other advantage is that it is open source and therefore completely free. Novel analytical methods are being added constantly to the already comprehensive suite of tools available in R. Mark Gardener is both an ecologist and an analyst. He has worked in a range of ecosystems around the world and has been involved in research across a spectrum of community types. His knowledge of R is largely self-taught and this gives him insight into the needs of students learning to use R for complicated analyses.

Ecological Models and Data in R

Author: Benjamin M. Bolker
Publisher: Princeton University Press
ISBN: 0691125228
Category : Computers
Languages : en
Pages : 408

Book Description
Introduction and background; Exploratory data analysis and graphics; Deterministic functions for ecological modeling; Probability and stochastic distributions for ecological modeling; Stochatsic simulation and power analysis; Likelihood and all that; Optimization and all that; Likelihood examples; Standar statistics revisited; Modeling variance; Dynamic models.

The Essential R Reference

Author: Mark Gardener
Publisher: John Wiley & Sons
ISBN: 1118391381
Category : Computers
Languages : en
Pages : 657

Book Description
An essential library of basic commands you can copy and paste into R The powerful and open-source statistical programming language R is rapidly growing in popularity, but it requires that you type in commands at the keyboard rather than use a mouse, so you have to learn the language of R. But there is a shortcut, and that's where this unique book comes in. A companion book to Visualize This: The FlowingData Guide to Design, Visualization, and Statistics, this practical reference is a library of basic R commands that you can copy and paste into R to perform many types of statistical analyses. Whether you're in technology, science, medicine, business, or engineering, you can quickly turn to your topic in this handy book and find the commands you need. Comprehensive command reference for the R programming language and a companion book to Visualize This: The FlowingData Guide to Design, Visualization, and Statistics Combines elements of a dictionary, glossary, and thesaurus for the R language Provides easy accessibility to the commands you need, by topic, which you can cut and paste into R as needed Covers getting, saving, examining, and manipulating data; statistical test and math; and all the things you can do with graphs Also includes a collection of utilities that you'll find useful Simplify the complex statistical R programming language with The Essential R Reference. .

Beginning R

Author: Mark Gardener
Publisher: John Wiley & Sons
ISBN: 1118239377
Category : Computers
Languages : en
Pages : 504

Book Description
Conquer the complexities of this open source statistical language R is fast becoming the de facto standard for statistical computing and analysis in science, business, engineering, and related fields. This book examines this complex language using simple statistical examples, showing how R operates in a user-friendly context. Both students and workers in fields that require extensive statistical analysis will find this book helpful as they learn to use R for simple summary statistics, hypothesis testing, creating graphs, regression, and much more. It covers formula notation, complex statistics, manipulating data and extracting components, and rudimentary programming. R, the open source statistical language increasingly used to handle statistics and produces publication-quality graphs, is notoriously complex This book makes R easier to understand through the use of simple statistical examples, teaching the necessary elements in the context in which R is actually used Covers getting started with R and using it for simple summary statistics, hypothesis testing, and graphs Shows how to use R for formula notation, complex statistics, manipulating data, extracting components, and regression Provides beginning programming instruction for those who want to write their own scripts Beginning R offers anyone who needs to perform statistical analysis the information necessary to use R with confidence.

New Statistics with R

Author: Andy Hector
Publisher: Oxford University Press
ISBN: 0198729057
Category : Mathematics
Languages : en
Pages : 217

Book Description
An introductory level text covering linear, generalized linear, linear mixed-effects, and generalized mixed models implemented in R and set within a contemporary framework.

R in Action, Third Edition

Author: Robert I. Kabacoff
Publisher: Simon and Schuster
ISBN: 1638357013
Category : Computers
Languages : en
Pages : 654

Book Description
R is the most powerful tool you can use for statistical analysis. This definitive guide smooths R’s steep learning curve with practical solutions and real-world applications for commercial environments. In R in Action, Third Edition you will learn how to: Set up and install R and RStudio Clean, manage, and analyze data with R Use the ggplot2 package for graphs and visualizations Solve data management problems using R functions Fit and interpret regression models Test hypotheses and estimate confidence Simplify complex multivariate data with principal components and exploratory factor analysis Make predictions using time series forecasting Create dynamic reports and stunning visualizations Techniques for debugging programs and creating packages R in Action, Third Edition makes learning R quick and easy. That’s why thousands of data scientists have chosen this guide to help them master the powerful language. Far from being a dry academic tome, every example you’ll encounter in this book is relevant to scientific and business developers, and helps you solve common data challenges. R expert Rob Kabacoff takes you on a crash course in statistics, from dealing with messy and incomplete data to creating stunning visualizations. This revised and expanded third edition contains fresh coverage of the new tidyverse approach to data analysis and R’s state-of-the-art graphing capabilities with the ggplot2 package. About the technology Used daily by data scientists, researchers, and quants of all types, R is the gold standard for statistical data analysis. This free and open source language includes packages for everything from advanced data visualization to deep learning. Instantly comfortable for mathematically minded users, R easily handles practical problems without forcing you to think like a software engineer. About the book R in Action, Third Edition teaches you how to do statistical analysis and data visualization using R and its popular tidyverse packages. In it, you’ll investigate real-world data challenges, including forecasting, data mining, and dynamic report writing. This revised third edition adds new coverage for graphing with ggplot2, along with examples for machine learning topics like clustering, classification, and time series analysis. What's inside Clean, manage, and analyze data Use the ggplot2 package for graphs and visualizations Techniques for debugging programs and creating packages A complete learning resource for R and tidyverse About the reader Requires basic math and statistics. No prior experience with R needed. About the author Dr. Robert I Kabacoff is a professor of quantitative analytics at Wesleyan University and a seasoned data scientist with more than 20 years of experience. Table of Contents PART 1 GETTING STARTED 1 Introduction to R 2 Creating a dataset 3 Basic data management 4 Getting started with graphs 5 Advanced data management PART 2 BASIC METHODS 6 Basic graphs 7 Basic statistics PART 3 INTERMEDIATE METHODS 8 Regression 9 Analysis of variance 10 Power analysis 11 Intermediate graphs 12 Resampling statistics and bootstrapping PART 4 ADVANCED METHODS 13 Generalized linear models 14 Principal components and factor analysis 15 Time series 16 Cluster analysis 17 Classification 18 Advanced methods for missing data PART 5 EXPANDING YOUR SKILLS 19 Advanced graphs 20 Advanced programming 21 Creating dynamic reports 22 Creating a package

EnvStats

Author: Steven P. Millard
Publisher: Springer Science & Business Media
ISBN: 1461484561
Category : Computers
Languages : en
Pages : 305

Book Description
This book describes EnvStats, a new comprehensive R package for environmental statistics and the successor to the S-PLUS module EnvironmentalStats for S-PLUS (first released in 1997). EnvStats and R provide an open-source set of powerful functions for performing graphical and statistical analyses of environmental data, bringing major environmental statistical methods found in the literature and regulatory guidance documents into one statistical package, along with an extensive hypertext help system that explains what these methods do, how to use these methods, and where to find them in the environmental statistics literature. EnvStats also includes numerous built-in data sets from regulatory guidance documents and the environmental statistics literature. This book shows how to use EnvStats and R to easily: * graphically display environmental data * plot probability distributions * estimate distribution parameters and construct confidence intervals on the original scale for commonly used distributions such as the lognormal and gamma, as well as do this nonparametrically * estimate and construct confidence intervals for distribution percentiles or do this nonparametrically (e.g., to compare to an environmental protection standard) * perform and plot the results of goodness-of-fit tests * compute optimal Box-Cox data transformations * compute prediction limits and simultaneous prediction limits (e.g., to assess compliance at multiple sites for multiple constituents) * perform nonparametric estimation and test for seasonal trend (even in the presence of correlated observations) * perform power and sample size computations and create companion plots for sampling designs based on confidence intervals, hypothesis tests, prediction intervals, and tolerance intervals * deal with non-detect (censored) data * perform Monte Carlo simulation and probabilistic risk assessment * reproduce specific examples in EPA guidance documents EnvStats combined with other R packages (e.g., for spatial analysis) provides the environmental scientist, statistician, researcher, and technician with tools to “get the job done!”

Statistical Analysis of Microbiome Data with R

Author: Yinglin Xia
Publisher: Springer
ISBN: 9811315345
Category : Computers
Languages : en
Pages : 518

Book Description
This unique book addresses the statistical modelling and analysis of microbiome data using cutting-edge R software. It includes real-world data from the authors’ research and from the public domain, and discusses the implementation of R for data analysis step by step. The data and R computer programs are publicly available, allowing readers to replicate the model development and data analysis presented in each chapter, so that these new methods can be readily applied in their own research. The book also discusses recent developments in statistical modelling and data analysis in microbiome research, as well as the latest advances in next-generation sequencing and big data in methodological development and applications. This timely book will greatly benefit all readers involved in microbiome, ecology and microarray data analyses, as well as other fields of research.