Parallel R

Parallel R PDF Author: Q. Ethan McCallum
Publisher: "O'Reilly Media, Inc."
ISBN: 1449320333
Category : Computers
Languages : en
Pages : 123

Book Description
It’s tough to argue with R as a high-quality, cross-platform, open source statistical software product—unless you’re in the business of crunching Big Data. This concise book introduces you to several strategies for using R to analyze large datasets, including three chapters on using R and Hadoop together. You’ll learn the basics of Snow, Multicore, Parallel, Segue, RHIPE, and Hadoop Streaming, including how to find them, how to use them, when they work well, and when they don’t. With these packages, you can overcome R’s single-threaded nature by spreading work across multiple CPUs, or offloading work to multiple machines to address R’s memory barrier. Snow: works well in a traditional cluster environment Multicore: popular for multiprocessor and multicore computers Parallel: part of the upcoming R 2.14.0 release R+Hadoop: provides low-level access to a popular form of cluster computing RHIPE: uses Hadoop’s power with R’s language and interactive shell Segue: lets you use Elastic MapReduce as a backend for lapply-style operations

Parallel Computing for Data Science

Parallel Computing for Data Science PDF Author: Norman Matloff
Publisher: CRC Press
ISBN: 1466587032
Category : Computers
Languages : en
Pages : 340

Book Description
This is one of the first parallel computing books to focus exclusively on parallel data structures, algorithms, software tools, and applications in data science. The book prepares readers to write effective parallel code in various languages and learn more about different R packages and other tools. It covers the classic n observations, p variables matrix format and common data structures. Many examples illustrate the range of issues encountered in parallel programming.

Mastering Parallel Programming with R

Mastering Parallel Programming with R PDF Author: Simon R. Chapple
Publisher: Packt Publishing Ltd
ISBN: 1784394629
Category : Computers
Languages : en
Pages : 244

Book Description
Master the robust features of R parallel programming to accelerate your data science computations About This Book Create R programs that exploit the computational capability of your cloud platforms and computers to the fullest Become an expert in writing the most efficient and highest performance parallel algorithms in R Get to grips with the concept of parallelism to accelerate your existing R programs Who This Book Is For This book is for R programmers who want to step beyond its inherent single-threaded and restricted memory limitations and learn how to implement highly accelerated and scalable algorithms that are a necessity for the performant processing of Big Data. No previous knowledge of parallelism is required. This book also provides for the more advanced technical programmer seeking to go beyond high level parallel frameworks. What You Will Learn Create and structure efficient load-balanced parallel computation in R, using R's built-in parallel package Deploy and utilize cloud-based parallel infrastructure from R, including launching a distributed computation on Hadoop running on Amazon Web Services (AWS) Get accustomed to parallel efficiency, and apply simple techniques to benchmark, measure speed and target improvement in your own code Develop complex parallel processing algorithms with the standard Message Passing Interface (MPI) using RMPI, pbdMPI, and SPRINT packages Build and extend a parallel R package (SPRINT) with your own MPI-based routines Implement accelerated numerical functions in R utilizing the vector processing capability of your Graphics Processing Unit (GPU) with OpenCL Understand parallel programming pitfalls, such as deadlock and numerical instability, and the approaches to handle and avoid them Build a task farm master-worker, spatial grid, and hybrid parallel R programs In Detail R is one of the most popular programming languages used in data science. Applying R to big data and complex analytic tasks requires the harnessing of scalable compute resources. Mastering Parallel Programming with R presents a comprehensive and practical treatise on how to build highly scalable and efficient algorithms in R. It will teach you a variety of parallelization techniques, from simple use of R's built-in parallel package versions of lapply(), to high-level AWS cloud-based Hadoop and Apache Spark frameworks. It will also teach you low level scalable parallel programming using RMPI and pbdMPI for message passing, applicable to clusters and supercomputers, and how to exploit thousand-fold simple processor GPUs through ROpenCL. By the end of the book, you will understand the factors that influence parallel efficiency, including assessing code performance and implementing load balancing; pitfalls to avoid, including deadlock and numerical instability issues; how to structure your code and data for the most appropriate type of parallelism for your problem domain; and how to extract the maximum performance from your R code running on a variety of computer systems. Style and approach This book leads you chapter by chapter from the easy to more complex forms of parallelism. The author's insights are presented through clear practical examples applied to a range of different problems, with comprehensive reference information for each of the R packages employed. The book can be read from start to finish, or by dipping in chapter by chapter, as each chapter describes a specific parallel approach and technology, so can be read as a standalone.

R Programming for Data Science

R Programming for Data Science PDF Author: Roger D. Peng
Publisher:
ISBN: 9781365056826
Category : R (Computer program language)
Languages : en
Pages : 0

Book Description
Data science has taken the world by storm. Every field of study and area of business has been affected as people increasingly realize the value of the incredible quantities of data being generated. But to extract value from those data, one needs to be trained in the proper data science skills. The R programming language has become the de facto programming language for data science. Its flexibility, power, sophistication, and expressiveness have made it an invaluable tool for data scientists around the world. This book is about the fundamentals of R programming. You will get started with the basics of the language, learn how to manipulate datasets, how to write functions, and how to debug and optimize code. With the fundamentals provided in this book, you will have a solid foundation on which to build your data science toolbox.

A Tour of Data Science

A Tour of Data Science PDF Author: Nailong Zhang
Publisher: CRC Press
ISBN: 1000215199
Category : Computers
Languages : en
Pages : 217

Book Description
A Tour of Data Science: Learn R and Python in Parallel covers the fundamentals of data science, including programming, statistics, optimization, and machine learning in a single short book. It does not cover everything, but rather, teaches the key concepts and topics in Data Science. It also covers two of the most popular programming languages used in Data Science, R and Python, in one source. Key features: Allows you to learn R and Python in parallel Cover statistics, programming, optimization and predictive modelling, and the popular data manipulation tools – data.table and pandas Provides a concise and accessible presentation Includes machine learning algorithms implemented from scratch, linear regression, lasso, ridge, logistic regression, gradient boosting trees, etc. Appealing to data scientists, statisticians, quantitative analysts, and others who want to learn programming with R and Python from a data science perspective.

Parallel Computing on Heterogeneous Networks

Parallel Computing on Heterogeneous Networks PDF Author: Alexey L. Lastovetsky
Publisher: John Wiley & Sons
ISBN: 0470349484
Category : Computers
Languages : en
Pages : 440

Book Description
New approaches to parallel computing are being developed that make better use of the heterogeneous cluster architecture Provides a detailed introduction to parallel computing on heterogenous clusters All concepts and algorithms are illustrated with working programs that can be compiled and executed on any cluster The algorithms discussed have practical applications in a range of real-life parallel computing problems, such as the N-body problem, portfolio management, and the modeling of oil extraction

Shared Memory Application Programming

Shared Memory Application Programming PDF Author: Victor Alessandrini
Publisher: Morgan Kaufmann
ISBN: 0128038209
Category : Computers
Languages : en
Pages : 557

Book Description
Shared Memory Application Programming presents the key concepts and applications of parallel programming, in an accessible and engaging style applicable to developers across many domains. Multithreaded programming is today a core technology, at the basis of all software development projects in any branch of applied computer science. This book guides readers to develop insights about threaded programming and introduces two popular platforms for multicore development: OpenMP and Intel Threading Building Blocks (TBB). Author Victor Alessandrini leverages his rich experience to explain each platform's design strategies, analyzing the focus and strengths underlying their often complementary capabilities, as well as their interoperability. The book is divided into two parts: the first develops the essential concepts of thread management and synchronization, discussing the way they are implemented in native multithreading libraries (Windows threads, Pthreads) as well as in the modern C++11 threads standard. The second provides an in-depth discussion of TBB and OpenMP including the latest features in OpenMP 4.0 extensions to ensure readers' skills are fully up to date. Focus progressively shifts from traditional thread parallelism to modern task parallelism deployed by modern programming environments. Several chapter include examples drawn from a variety of disciplines, including molecular dynamics and image processing, with full source code and a software library incorporating a number of utilities that readers can adapt into their own projects. - Designed to introduce threading and multicore programming to teach modern coding strategies for developers in applied computing - Leverages author Victor Alessandrini's rich experience to explain each platform's design strategies, analyzing the focus and strengths underlying their often complementary capabilities, as well as their interoperability - Includes complete, up-to-date discussions of OpenMP 4.0 and TBB - Based on the author's training sessions, including information on source code and software libraries which can be repurposed

Advanced R

Advanced R PDF Author: Hadley Wickham
Publisher: CRC Press
ISBN: 1498759807
Category : Mathematics
Languages : en
Pages : 669

Book Description
An Essential Reference for Intermediate and Advanced R Programmers Advanced R presents useful tools and techniques for attacking many types of R programming problems, helping you avoid mistakes and dead ends. With more than ten years of experience programming in R, the author illustrates the elegance, beauty, and flexibility at the heart of R. The book develops the necessary skills to produce quality code that can be used in a variety of circumstances. You will learn: The fundamentals of R, including standard data types and functions Functional programming as a useful framework for solving wide classes of problems The positives and negatives of metaprogramming How to write fast, memory-efficient code This book not only helps current R users become R programmers but also shows existing programmers what’s special about R. Intermediate R programmers can dive deeper into R and learn new strategies for solving diverse problems while programmers from other languages can learn the details of R and understand why R works the way it does.

Parallel Scientific Computing in C++ and MPI

Parallel Scientific Computing in C++ and MPI PDF Author: George Em Karniadakis
Publisher: Cambridge University Press
ISBN: 110749477X
Category : Computers
Languages : en
Pages : 640

Book Description
Numerical algorithms, modern programming techniques, and parallel computing are often taught serially across different courses and different textbooks. The need to integrate concepts and tools usually comes only in employment or in research - after the courses are concluded - forcing the student to synthesise what is perceived to be three independent subfields into one. This book provides a seamless approach to stimulate the student simultaneously through the eyes of multiple disciplines, leading to enhanced understanding of scientific computing as a whole. The book includes both basic as well as advanced topics and places equal emphasis on the discretization of partial differential equations and on solvers. Some of the advanced topics include wavelets, high-order methods, non-symmetric systems, and parallelization of sparse systems. The material covered is suited to students from engineering, computer science, physics and mathematics.

Using OpenMP

Using OpenMP PDF Author: Barbara Chapman
Publisher: MIT Press
ISBN: 0262533022
Category : Computers
Languages : en
Pages : 378

Book Description
A comprehensive overview of OpenMP, the standard application programming interface for shared memory parallel computing—a reference for students and professionals. "I hope that readers will learn to use the full expressibility and power of OpenMP. This book should provide an excellent introduction to beginners, and the performance section should help those with some experience who want to push OpenMP to its limits." —from the foreword by David J. Kuck, Intel Fellow, Software and Solutions Group, and Director, Parallel and Distributed Solutions, Intel Corporation OpenMP, a portable programming interface for shared memory parallel computers, was adopted as an informal standard in 1997 by computer scientists who wanted a unified model on which to base programs for shared memory systems. OpenMP is now used by many software developers; it offers significant advantages over both hand-threading and MPI. Using OpenMP offers a comprehensive introduction to parallel programming concepts and a detailed overview of OpenMP. Using OpenMP discusses hardware developments, describes where OpenMP is applicable, and compares OpenMP to other programming interfaces for shared and distributed memory parallel architectures. It introduces the individual features of OpenMP, provides many source code examples that demonstrate the use and functionality of the language constructs, and offers tips on writing an efficient OpenMP program. It describes how to use OpenMP in full-scale applications to achieve high performance on large-scale architectures, discussing several case studies in detail, and offers in-depth troubleshooting advice. It explains how OpenMP is translated into explicitly multithreaded code, providing a valuable behind-the-scenes account of OpenMP program performance. Finally, Using OpenMP considers trends likely to influence OpenMP development, offering a glimpse of the possibilities of a future OpenMP 3.0 from the vantage point of the current OpenMP 2.5. With multicore computer use increasing, the need for a comprehensive introduction and overview of the standard interface is clear. Using OpenMP provides an essential reference not only for students at both undergraduate and graduate levels but also for professionals who intend to parallelize existing codes or develop new parallel programs for shared memory computer architectures.
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